from skimage.io import imread
import pyclesperanto_prototype as cle # version 0.22.0
Loading ‘blobs’#
image0_b = imread(
"C:/Users/haase/mambaforge/envs/bio39/lib/site-packages/napari_pyclesperanto_assistant/data/blobs.tif")
image0_b
gaussian blur#
image1_gb = cle.gaussian_blur(image0_b, None, 1.0, 1.0, 0.0)
image1_gb
threshold otsu#
image2_to = cle.threshold_otsu(image1_gb)
image2_to
connected components labeling box#
image3_cclb = cle.connected_components_labeling_box(image2_to)
image3_cclb