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PoL Bio-Image Analysis Training School on GPU-Accelerated Image Analysis

Monday

Course preparation
Clesperanto
Using clesperanto from the Napari Assistant
- The Napari Assistant
- Generating Jupyter Notebooks from the Napari Assistant
cupy
Intro to Deconvolution and Restoration

Tuesday

High-performance-computing
Using Clesperanto on Taurus
Introduction to Pytorch

Wednesday

AI segmentation and denoising
Lazy and parallel bio-image processing using DASK

Repository
Open issue

.md

Using Clesperanto on Taurus

Using Clesperanto on Taurus#

In this session we will make use of clesperanto on TU Dresden’s HPC infrastructure.

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High-performance-computing

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Executing clesperanto on the TU Dresden HPC

By Stephane Rigaud, Brian Northan, Till Korten, Neringa Jurenaite, Apurv Deepak Kulkarni, Peter Steinbach, Sebastian Starke, Johannes Soltwedel and Marvin Albert, Robert Haase, DFG Cluster of Excellence "Physics of Life", TU Dresden

Copyright: This work can be reused under the terms of the CC-BY 4.0 license unless mentioned otherwise.