from skimage.io import imread
import pyclesperanto_prototype as cle # version 0.22.0
Loading ‘blobs’#
image0_b = imread("/projects/p_scads_trainings/BIAS/blobs.tif")
image0_b
array([[ 40, 32, 24, ..., 216, 200, 200],
[ 56, 40, 24, ..., 232, 216, 216],
[ 64, 48, 24, ..., 240, 232, 232],
...,
[ 72, 80, 80, ..., 48, 48, 48],
[ 80, 80, 80, ..., 48, 48, 48],
[ 96, 88, 80, ..., 48, 48, 48]], dtype=uint8)
gaussian blur#
image1_gb = cle.gaussian_blur(image0_b, None, 1.0, 1.0, 0.0)
image1_gb
|
cle._ image
|
threshold otsu#
image2_to = cle.threshold_otsu(image1_gb)
image2_to
|
cle._ image
|
connected components labeling box#
image3_cclb = cle.connected_components_labeling_box(image2_to)
image3_cclb
|
cle._ image
|