Opening and Displaying with Images in Python#

In this section, we will show you how to open images in python and a few ways to display them in a jupyter notebook. We start with imread function from scikit-image.io, which can open standard image formats like ‘.tif’ and ‘.png’. Then we show how ways to display images side-by-side in a single figure. Finally, we show you how to work with multichannel images and an example with proprietary formats. As a bonus part, we also show how to install an additional python package to an existing conda environment.

The slides for this section can be found here.

We will also interact with napari from jupyter notebooks. napari is a fast, interactive, multi-dimensional image viewer for Python, and it is designed for browsing, annotating, and analyzing large multi-dimensional images.

We also show an example of how to set up a simple 3D image processing workflow in a Jupyter notebook using napari.

See also#