Welcome!#
Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences. The contents of this blog are licensed by the respective authors under CC-BY 4.0 license unless a different license is specified.
If you want to read more about why we blog, please check out this blog post.
If you have feedback or suggestions, if spotted a typo, broken link or misleading explanation, please get in touch via a github issue or pull request so that we can fix it. Contributions are very welcome.
Recent blog posts#
Training a yolo model on an OMERO dataset#
Johannes Soltwedel, August 12th, 2024
YOLO is a powerful tool for object detection and thus, obviously interesting in bio-image analysis. This blog post will show you how to train a YOLO model on an OMERO dataset.
Getting started with Miniforge and Python]#
Mara Lampert, July 8th, 2024
This post will help you to get started with Python using Miniforge. More precisely, you will learn how to install Miniforge, how to create and use conda environments and you will get to know some important packages for bio image analysis.
Installation of Elephant Server on Windows#
Stefan Hahmann, April 24th, 2024
ELEPHANT is a platform for 3D cell tracking, based on incremental and interactive deep learning. This post will show you how to install the ELEPHANT server component on a Windows machine.
Running bio image analysis workflows on your machine#
Stefan Hahmann, December 21st, 2023
Jupyter Notebooks may be used to run bio image analysis workflows on your machine with your own data. They are a great tool to share workflows with others. This post will show you how to run workflows that have been shared via GitHub.
Best of both worlds: Combining Qt Designer and magicgui#
Johannes Soltwedel, Mai 12th, 2023
This blog post will give you a quick introduction on how to combine two great tools for the creation of graphical user interfaces in napari: The Qt Designer and magicgui.
Find more blog posts on the left sidebar. Enjoy reading!
Acknowledgements#
We acknowledge the support by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC2068 - Cluster of Excellence Physics of Life of TU Dresden.
