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Bio-Image Analysis with Napari and Python (DIGS-BB Light Microscopy Course 2022)
Bio-Image analysis with Python and Napari - DIGS-BB Light Microscopy Course 2022
Introduction to Napari for image analysis
Installation
Introduction to Jupyter Lab and napari
Python code in Jupyter notebooks
Pitfalls when working with Jupyter notebooks
Using Napari to visualize and interact with images
Python basics
Lists
Cropping lists
Arrays
Conditions
Loops
Functions
Image Processing
Histogram
Binarization
Image Filters
Subplots with matplotlib
Morphological Image Processing
Segmentation and feature extraction
Thresholding
Thresholding and noise
Feature extraction
Otsu’s threshold method (optional)
Index
