Omero-tools

This repository contains a collection of tools for working with OMERO. Such tools can be working with the OMERO command line interface to transfer datasets between repositories, etc. If you find anything to be missing, please feel free to contribute to this repository or open an issue.

Contributions¶

Contributions are welcome! Please feel free to open an issue or a pull request if you have any suggestions or improvements. To build the jupyter book on your local machine, you can use the following commands:

pip install -r jupyter-book
jupyter-book build docs

Other resources¶

The tutorials in this repo limit themselves on how to interact with OMERO through the Python API. However, there is a myriad of other clever and convenient ways of working with OMERO:

• The local OMERO client OMERO insight

• The OMERO web client

• The OMERO command line API

Additionally, there are a number of other resources you might find useful:

• I3D:bio’s OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training, shared under CC-BY 4.0.