API Reference

This is the class and function reference of biapol-utilities. Please refer to the examples for further details, as the class and function raw specifications may not be enough to give full guidelines on their uses.

The label module

The label module bundles functions that operate on label images, i.e. images with annotated objects. The idendity of an object is encoded in the pixel value which must be an integer number.

label.compare_labels(label_image_x, ...)	Evaluate differences between two label images.
label.intersection_over_union_matrix(...)	Generate a matrix with intersection over union of all label pairs.
label.match_labels(label_image_x, label_image_y)	Match labels in label_image_y with labels in label_image_x.
label.match_labels_stack(label_stack[, ...])	Match labels from subsequent slices with specified method.

The data module

The data module provides example data to be usedin the examples section.

data.blobs()

Gray-level "blobs" image [1].